Path assignment matrix of the design

pathAssign() returns the path assignment matrix that sc.set.poly() stores in the Design slot of a ScMaSigPro object: one row per bin, with the binned pseudotime, a replicate index and a 0/1 column per path. pathAssign<- replaces it.

Usage

pathAssign(object, value = "missing")

pathAssign(object) <- value

# S4 method for class 'ScMaSigPro'
pathAssign(object, value = "missing")

# S4 method for class 'ScMaSigPro'
pathAssign(object) <- value

Arguments

object

A ScMaSigPro object.

value

A matrix with the rows of the design matrix (predictors()), one per bin and with the same names.

Value

pathAssign(object): a numeric matrix. pathAssign<- and pathAssign(object, value): the updated object, returned invisibly by the latter.

Details

pathAssign(object, value) sets value as pathAssign(object) <- value does.

See also

Other accessors: cDense(), cSparse(), eDense(), eSparse(), predictors()

Examples

data("scmp.ob", package = "scMaSigPro")
head(pathAssign(scmp.ob))
#>             scmp_binned_pseudotime Replicate Path1 Path2
#> Path1_bin_1                      1         1     1     0
#> Path1_bin_2                      2         2     1     0
#> Path1_bin_3                      3         3     1     0
#> Path1_bin_4                      4         4     1     0
#> Path1_bin_5                      5         5     1     0
#> Path1_bin_6                      6         6     1     0